/** * \file atom/AngleSingletonScore.h * \brief A score on the deviation of an angle from ideality. * * Copyright 2007-2010 IMP Inventors. All rights reserved. */ #include #include #include #include #include IMPATOM_BEGIN_NAMESPACE AngleSingletonScore::AngleSingletonScore(UnaryFunction *f): f_(f){} double AngleSingletonScore::evaluate(Particle *b, DerivativeAccumulator *da) const { IMP_IF_CHECK(USAGE_AND_INTERNAL) { Angle::decorate_particle(b); } Angle ad(b); Float ideal = ad.get_ideal(); Float s = ad.get_stiffness(); if (s == 0) { return 0.; } core::XYZ d[3]; for (unsigned int i = 0; i < 3; ++i) { d[i] = core::XYZ(ad.get_particle(i)); } if (da) { algebra::Vector3D derv[3]; double ang = core::internal::angle(d[0], d[1], d[2], &derv[0], &derv[1], &derv[2]); double diff = core::internal::get_angle_difference(ideal, ang); DerivativePair dp = f_->evaluate_with_derivative(s * diff); for (unsigned int i = 0; i < 3; ++i) { d[i].add_to_derivatives(derv[i] * s * dp.second, *da); } return dp.first; } else { double ang = core::internal::angle(d[0], d[1], d[2], NULL, NULL, NULL); double diff = core::internal::get_angle_difference(ang, ideal); return f_->evaluate(s * diff); } } ParticlesList AngleSingletonScore::get_interacting_particles(Particle *p) const { ParticlesList ret(1,ParticlesTemp(3)); Angle ad(p); ret[0][0]= ad.get_particle(0); ret[0][1]= ad.get_particle(1); ret[0][2]= ad.get_particle(2); return ret; } ContainersTemp AngleSingletonScore::get_input_containers(Particle *p) const { return ContainersTemp(1,p); } ParticlesTemp AngleSingletonScore::get_input_particles(Particle *p) const { ParticlesTemp ret(3); Angle ad(p); ret[0]= ad.get_particle(0); ret[1]= ad.get_particle(1); ret[2]= ad.get_particle(2); return ret; } bool AngleSingletonScore::get_is_changed(Particle *p) const { Angle b(p); return b.get_particle(0)->get_is_changed() || b.get_particle(1)->get_is_changed() || b.get_particle(2)->get_is_changed(); } void AngleSingletonScore::do_show(std::ostream &out) const { out << "function " << *f_ << std::endl; } IMPATOM_END_NAMESPACE