/** * \file DihedralRestraint.cpp \brief Dihedral restraint between four * particles. * * Copyright 2007-2010 IMP Inventors. All rights reserved. * */ #include #include #include #include #include #include #include #include IMPCORE_BEGIN_NAMESPACE DihedralRestraint::DihedralRestraint(UnaryFunction* score_func, Particle* p1, Particle* p2, Particle* p3, Particle* p4) { p_[0]=p1; p_[1]=p2; p_[2]=p3; p_[3]=p4; score_func_ = score_func; } //! Calculate the score for this dihedral restraint. /** \param[in] accum If not NULL, use this object to accumulate partial first derivatives. \return Current score. */ double DihedralRestraint::unprotected_evaluate(DerivativeAccumulator *accum) const { IMP_CHECK_OBJECT(score_func_); XYZ d0 = XYZ::decorate_particle(p_[0]); XYZ d1 = XYZ::decorate_particle(p_[1]); XYZ d2 = XYZ::decorate_particle(p_[2]); XYZ d3 = XYZ::decorate_particle(p_[3]); Float score; if (accum) { algebra::VectorD<3> derv0, derv1, derv2, derv3; double angle = internal::dihedral(d0, d1, d2, d3, &derv0, &derv1, &derv2, &derv3); Float deriv; boost::tie(score, deriv) = score_func_->evaluate_with_derivative(angle); d0.add_to_derivatives(derv0 * deriv, *accum); d1.add_to_derivatives(derv1 * deriv, *accum); d2.add_to_derivatives(derv2 * deriv, *accum); d3.add_to_derivatives(derv3 * deriv, *accum); } else { double angle = internal::dihedral(d0, d1, d2, d3, NULL, NULL, NULL, NULL); score = score_func_->evaluate(angle); } return score; } ParticlesList DihedralRestraint::get_interacting_particles() const { return ParticlesList(1, get_input_particles()); } ParticlesTemp DihedralRestraint::get_input_particles() const { ParticlesTemp ret(p_, p_+4); return ret; } ContainersTemp DihedralRestraint::get_input_containers() const { return ContainersTemp(); } //! Show the current restraint. /** \param[in] out Stream to send restraint description to. */ void DihedralRestraint::do_show(std::ostream& out) const { out << "dihedral restraint:" << std::endl; get_version_info().show(out); out << " particles: " << p_[0]->get_name(); out << ", " << p_[1]->get_name(); out << ", " << p_[2]->get_name(); out << " and " << p_[3]->get_name(); out << " "; score_func_->show(out); out << std::endl; } IMPCORE_END_NAMESPACE