/** * \file SingletonContainer.h \brief A container for Singletons. * * This file is generated by a script (core/tools/make-container). * Do not edit directly. * * Copyright 2007-2010 IMP Inventors. All rights reserved. */ #ifndef IMP_SINGLETON_CONTAINER_H #define IMP_SINGLETON_CONTAINER_H #include "kernel_config.h" #include "internal/IndexingIterator.h" #include "Particle.h" #include "container_base.h" #include "VersionInfo.h" #include "VectorOfRefCounted.h" #include "DerivativeAccumulator.h" #include "internal/OwnerPointer.h" #include "ParticleTuple.h" #include "macros.h" IMP_BEGIN_NAMESPACE class SingletonModifier; class SingletonScore; class SingletonContainer; typedef std::pair SingletonContainerPair; //! A shared container for Singletons /** Stores a searchable shared collection of Singletons. \ingroup restraints \implementationwithoutexample{SingletonContainer, IMP_SINGLETON_CONTAINER} */ class IMPEXPORT SingletonContainer : public Container { mutable internal::OwnerPointer added_, removed_; struct Accessor { typedef Accessor This; typedef Particle* result_type; typedef unsigned int argument_type; result_type operator()(argument_type i) const { return o_->get_particle(i); } Accessor(SingletonContainer *pc): o_(pc){} Accessor(): o_(NULL){} IMP_COMPARISONS_1(o_); private: // This should be ref counted, but swig memory management is broken SingletonContainer* o_; }; protected: /** Containers must have containers that keep track of the particles which have been added or since the last step. These containers must be registered with the parent SingletonContainer. Containers which are themselves returned by the get_added/removed functions do not have to register such containers. */ virtual SingletonContainerPair get_added_and_removed_containers() const =0; bool get_has_added_and_removed_containers() const { return added_; } SingletonContainer(){} SingletonContainer(Model *m, std::string name="SingletonContainer %1%"); public: typedef Particle* ContainedType; /** \note This function may be linear. Be aware of the complexity bounds of your particular container. */ virtual bool get_contains_particle(Particle* v) const =0; //! return the number of Singletons in the container /** \note this isn't always constant time */ virtual unsigned int get_number_of_particles() const =0; ParticlesTemp get_particles() const { return ParticlesTemp(particles_begin(), particles_end()); } virtual Particle* get_particle(unsigned int i) const=0; #ifdef IMP_DOXYGEN //! An iterator through the contents of the container class ParticleIterator; #else typedef internal::IndexingIterator ParticleIterator; #endif //! begin iterating through the Singletons ParticleIterator particles_begin() const { // Since I can't make the count mutable in Object return ParticleIterator(Accessor(const_cast(this)), 0); } //! iterate through the Singletons ParticleIterator particles_end() const { return ParticleIterator(Accessor(const_cast(this)), get_number_of_particles()); } //! Apply a SingletonModifier to the contents virtual void apply(const SingletonModifier *sm)=0; //! Apply a SingletonModifier to the contents virtual void apply(const SingletonModifier *sm, DerivativeAccumulator &da)=0; //! Evaluate a score on the contents virtual double evaluate(const SingletonScore *s, DerivativeAccumulator *da) const=0; /** \name Incremental Scoring When incremental scoring is used, the container keeps track of changes to it since the last Model::evaluate() call. \unstable{SingletonContainer::get_removed_container()} The address of the objects returned should not change over the lifetime of this container (but, of course, their contents will). @{ */ SingletonContainer* get_removed_container() const { // must not be an added or removed container get_model(); if (!added_) { std::pair cp= get_added_and_removed_containers(); added_=cp.first; removed_=cp.second; } IMP_USAGE_CHECK(added_, "The containers returned by " << " get_added_container() do not " << " track their own added and removed contents."); SingletonContainer *ret= dynamic_cast(removed_.get()); IMP_INTERNAL_CHECK(ret, "Cannot cast object " << removed_->get_name() << " to a SingletonContainer."); return ret; } SingletonContainer* get_added_container() const { // must not be an added or removed container if (!added_) { std::pair cp= get_added_and_removed_containers(); added_=cp.first; removed_=cp.second; } IMP_USAGE_CHECK(added_, "The containers returned by " << " get_added_container() do not " << " track their own added and removed contents."); SingletonContainer *ret= dynamic_cast(added_.get()); IMP_INTERNAL_CHECK(ret, "Cannot cast object " << added_->get_name() << " to a SingletonContainer."); return ret; } /** Return the change in score (and derivatives) since the last evaluate of the current contents of the container. */ virtual double evaluate_change(const SingletonScore *o, DerivativeAccumulator *da) const = 0; /** Return the score of the last evaluate for the current contents of the container. */ virtual double evaluate_prechange(const SingletonScore *o, DerivativeAccumulator *da) const = 0; /** @} */ #ifndef IMP_DOXYGEN typedef Particle* value_type; Particle* get(unsigned int i) const {return get_particle(i);} ParticlesTemp get() const { return get_particles(); } bool get_contains(Particle* v) const { return get_contains_particle(v); } unsigned int get_number() const {return get_number_of_particles();} virtual bool get_provides_access() const {return false;} virtual const ParticlesTemp& get_access() const { IMP_THROW("Object not implemented properly.", IndexException); } #endif IMP_REF_COUNTED_NONTRIVIAL_DESTRUCTOR(SingletonContainer); }; IMP_OUTPUT_OPERATOR(SingletonContainer); IMP_OBJECTS(SingletonContainer,SingletonContainers); IMP_END_NAMESPACE #endif /* IMP_SINGLETON_CONTAINER_H */