/** * \file SphereDistancePairScore.cpp * \brief A score on the distance between the surfaces of two spheres. * * Copyright 2007-2010 IMP Inventors. All rights reserved. */ #include #include #include #include #include #include IMPCORE_BEGIN_NAMESPACE SphereDistancePairScore::SphereDistancePairScore(UnaryFunction *f, FloatKey radius) : f_(f), radius_(radius) { } namespace { struct Shift { Float s_; Shift(Float s): s_(s){} Float operator()(Float t) const {return t-s_;} }; } Float SphereDistancePairScore::evaluate(const ParticlePair &p, DerivativeAccumulator *da) const { IMP_USAGE_CHECK(p[0]->has_attribute(radius_), "Particle " << p[0]->get_name() << "missing radius in SphereDistancePairScore"); IMP_USAGE_CHECK(p[1]->has_attribute(radius_), "Particle " << p[1]->get_name() << "missing radius in SphereDistancePairScore"); Float ra = p[0]->get_value(radius_); Float rb = p[1]->get_value(radius_); return internal::evaluate_distance_pair_score(XYZ(p[0]), XYZ(p[1]), da, f_.get(), boost::lambda::_1-(ra+rb)); } void SphereDistancePairScore::do_show(std::ostream &out) const { out << "function " << *f_ << std::endl; } HarmonicSphereDistancePairScore ::HarmonicSphereDistancePairScore(double d0, double k): x0_(d0), k_(k){} void HarmonicSphereDistancePairScore::do_show(std::ostream &out) const { out << "x0=" << x0_ << " and k=" << k_ << std::endl; } NormalizedSphereDistancePairScore ::NormalizedSphereDistancePairScore(UnaryFunction *f, FloatKey radius) : f_(f), radius_(radius) { } Float NormalizedSphereDistancePairScore::evaluate(const ParticlePair &p, DerivativeAccumulator *da) const { IMP_USAGE_CHECK(p[0]->has_attribute(radius_), "Particle " << p[0]->get_name() << "missing radius in NormalizedSphereDistancePairScore"); IMP_USAGE_CHECK(p[1]->has_attribute(radius_), "Particle " << p[1]->get_name() << "missing radius in NormalizedSphereDistancePairScore"); Float ra = p[0]->get_value(radius_); Float rb = p[1]->get_value(radius_); Float mr= std::min(ra, rb); // lambda is inefficient due to laziness return internal::evaluate_distance_pair_score(XYZ(p[0]), XYZ(p[1]), da, f_.get(), boost::lambda::_1/mr-(ra+rb)/mr); } void NormalizedSphereDistancePairScore::do_show(std::ostream &out) const { out << "function " << *f_ << std::endl; } WeightedSphereDistancePairScore::WeightedSphereDistancePairScore( UnaryFunction *f,FloatKey weight,FloatKey radius): f_(f), radius_(radius), weight_(weight){ } Float WeightedSphereDistancePairScore::evaluate(const ParticlePair &p, DerivativeAccumulator *da) const { IMP_USAGE_CHECK(p[0]->has_attribute(radius_), "Particle " << p[0]->get_name() << "missing radius in WeightedSphereDistancePairScore"); IMP_USAGE_CHECK(p[1]->has_attribute(radius_), "Particle " << p[1]->get_name() << "missing radius in WeightedSphereDistancePairScore"); IMP_USAGE_CHECK(p[0]->has_attribute(weight_), "Particle " << p[0]->get_name() << "missing weight in WeightedSphereDistancePairScore"); IMP_USAGE_CHECK(p[1]->has_attribute(weight_), "Particle " << p[1]->get_name() << "missing weight in WeightedSphereDistancePairScore"); Float ra = p[0]->get_value(radius_); Float rb = p[1]->get_value(radius_); Float wa = p[0]->get_value(weight_); Float wb = p[1]->get_value(weight_); // lambda is inefficient due to laziness return internal::evaluate_distance_pair_score( XYZ(p[0]), XYZ(p[1]), da, f_.get(), (boost::lambda::_1-(ra+rb))*(wa+wb)); } void WeightedSphereDistancePairScore::do_show(std::ostream &out) const { out << "function " << *f_ << std::endl; } void SoftSpherePairScore::do_show(std::ostream &out) const { out << "k=" << k_ << std::endl; } IMPCORE_END_NAMESPACE