import os import IMP import IMP.em import IMP.test import IMP.core class FittingTest(IMP.test.TestCase): """Class to test EM correlation restraint""" def test_origin_spacing_data_is_kept_in_mrc_format1(self): scene = IMP.em.read_map(self.get_input_file_name("in.mrc"), self.mrw) scene.set_origin(-100,-100,-100) IMP.em.write_map(scene,"test1.mrc",self.mrw) scene2 = IMP.em.read_map("test1.mrc", self.mrw) os.unlink("test1.mrc") origin2=scene2.get_origin() self.assertEqual(-100, origin2[0]) self.assertEqual(-100, origin2[1]) self.assertEqual(-100, origin2[2]) self.assertEqual(1, scene2.get_spacing()) def test_origin_spacing_data_is_kept_in_mrc_format2(self): mrw = IMP.em.MRCReaderWriter() scene = IMP.em.read_map(self.get_input_file_name("in.mrc"), self.mrw) scene.set_origin(-100,-100,-100) scene.update_voxel_size(10) self.assertEqual(10, scene.get_spacing()) IMP.em.write_map(scene,"test2.mrc",self.mrw) scene2 = IMP.em.read_map("test2.mrc", self.mrw) os.unlink("test2.mrc") origin2=scene2.get_origin() self.assertEqual(-100, origin2[0]) self.assertEqual(-100, origin2[1]) self.assertEqual(-100, origin2[2]) self.assertEqual(10, scene2.get_spacing()) def test_origin_spacing_data_is_kept_in_mrc_format3(self): mrw = IMP.em.MRCReaderWriter() scene = IMP.em.read_map(self.get_input_file_name("in.mrc"), self.mrw) scene.update_voxel_size(10) scene.set_origin(-100,-100,-100) self.assertEqual(10, scene.get_spacing()) scene.get_header().show() IMP.em.write_map(scene,"test3.mrc",self.mrw) scene2 = IMP.em.read_map("test3.mrc", self.mrw) os.unlink("test3.mrc") origin2=scene2.get_origin() self.assertEqual(-100, origin2[0]) self.assertEqual(-100, origin2[1]) self.assertEqual(-100, origin2[2]) self.assertEqual(10, scene2.get_spacing()) def test_origin_spacing_data_is_kept_in_mrc_format4(self): mrw = IMP.em.MRCReaderWriter() scene = IMP.em.read_map(self.get_input_file_name("in.mrc"), self.mrw) scene.update_voxel_size(10) self.assertEqual(10, scene.get_spacing()) scene.get_header().show() IMP.em.write_map(scene,"test4.mrc",self.mrw) scene2 = IMP.em.read_map("test4.mrc", self.mrw) os.unlink("test4.mrc") origin2=scene2.get_origin() self.assertEqual(10, scene2.get_spacing()) def setUp(self): """Build test model and optimizer""" IMP.test.TestCase.setUp(self) self.mrw = IMP.em.MRCReaderWriter() if __name__ == '__main__': IMP.test.main()