/** * \file IMP/atom/CoulombPairScore.h * \brief Coulomb (electrostatic) score between a pair of particles. * * Copyright 2007-2013 IMP Inventors. All rights reserved. */ #ifndef IMPATOM_COULOMB_PAIR_SCORE_H #define IMPATOM_COULOMB_PAIR_SCORE_H #include #include #include #include #include #include IMPATOM_BEGIN_NAMESPACE //! Coulomb (electrostatic) score between a pair of particles. /** The two particles in the pair must be Charged particles. The form of the potential is \f[ \frac{1}{4\pi\epsilon_0\epsilon_r} \frac{q_i q_j}{|r_{ij}|} \f] where \f$\epsilon_0\f$ is the permittivity of vacuum, \f$\epsilon_r\f$ the relative dielectric (adjustable; 1.0 by default), \f$q_i\f$ and \f$q_j\f$ the charges on the two particles, and \f$|r_{ij}|\f$ the distance between them. */ class IMPATOMEXPORT CoulombPairScore : public PairScore { IMP::OwnerPointer smoothing_function_; double relative_dielectric_; double multiplication_factor_; void calculate_multiplication_factor(); public: CoulombPairScore(SmoothingFunction *f) : smoothing_function_(f) { set_relative_dielectric(1.0); } void set_relative_dielectric(double relative_dielectric) { relative_dielectric_ = relative_dielectric; calculate_multiplication_factor(); } double get_relative_dielectric() const { return relative_dielectric_; } IMP_SIMPLE_PAIR_SCORE(CoulombPairScore); }; IMP_OBJECTS(CoulombPairScore,CoulombPairScores); IMPATOM_END_NAMESPACE #endif /* IMPATOM_COULOMB_PAIR_SCORE_H */