import IMP import IMP.test import IMP.core import IMP.algebra import IMP.atom import random class Tests(IMP.test.TestCase): """Test the symmetry restraint""" def test_bd_ss(self): """Test the bond decorator score""" m= IMP.Model() p0= IMP.Particle(m) p1= IMP.Particle(m) d0= IMP.core.XYZ.setup_particle(p0) d1= IMP.core.XYZ.setup_particle(p1) b0= IMP.atom.Bonded.setup_particle(p0) b1= IMP.atom.Bonded.setup_particle(p1) b= IMP.atom.create_custom_bond(b0, b1, 3,2) ss= IMP.atom.BondSingletonScore(IMP.core.Linear(0,1)) d0.set_coordinates(IMP.algebra.Vector3D(0,0,0)) d1.set_coordinates(IMP.algebra.Vector3D(0,0,3)) self.assertEqual(ss.evaluate(b.get_particle(), None), 0) d0.set_coordinates(IMP.algebra.Vector3D(0,0,0)) d1.set_coordinates(IMP.algebra.Vector3D(0,0,4)) self.assertEqual(ss.evaluate(b.get_particle(), None), 2) d0.set_coordinates(IMP.algebra.Vector3D(0,0,0)) d1.set_coordinates(IMP.algebra.Vector3D(0,0,2)) self.assertEqual(ss.evaluate(b.get_particle(), None), -2) def test_bd_deriv(self): """Test derivatives of the bond SingletonScore""" m= IMP.Model() p0= IMP.Particle(m) p1= IMP.Particle(m) d0= IMP.core.XYZ.setup_particle(p0) d1= IMP.core.XYZ.setup_particle(p1) b0= IMP.atom.Bonded.setup_particle(p0) b1= IMP.atom.Bonded.setup_particle(p1) b= IMP.atom.create_custom_bond(b0, b1, 1.0, 20.0) ss= IMP.atom.BondSingletonScore(IMP.core.Harmonic(0,1)) r = IMP.core.SingletonRestraint(ss, b.get_particle()) m.add_restraint(r) d0.set_coordinates(IMP.algebra.Vector3D(0,0,0)) d1.set_coordinates( IMP.algebra.get_random_vector_on(IMP.algebra.get_unit_sphere_3d()) \ * (random.random() * 4.0 + 2.0)) self.assertXYZDerivativesInTolerance(m, d0, 2.0, 5.0) self.assertXYZDerivativesInTolerance(m, d1, 2.0, 5.0) if __name__ == '__main__': IMP.test.main()