/** * \file TransformedDistancePairScore.cpp * \brief A Score on the distance between a pair of particles. * * Copyright 2007-2013 IMP Inventors. All rights reserved. */ #include #include #include #include #include #include IMPCORE_BEGIN_NAMESPACE TransformedDistancePairScore ::TransformedDistancePairScore(UnaryFunction *f, const algebra::Transformation3D &t): f_(f) { set_transformation(t); } struct TransformParticle { algebra::Vector3D tv_; const algebra::Rotation3D &ri_; XYZ d_; TransformParticle(const algebra::Transformation3D &t, const algebra::Rotation3D &r, Particle *p): ri_(r), d_(p){ tv_= t.get_transformed(d_.get_coordinates()); } Float get_coordinate(unsigned int i) const { return tv_[i]; } void add_to_derivatives(const algebra::Vector3D& f, DerivativeAccumulator &da) { IMP_LOG_VERBOSE( "Incoming deriv is " << f << std::endl); algebra::Vector3D r= ri_.get_rotated(f); IMP_LOG_VERBOSE( "Transformed deriv is " << r << std::endl); d_.add_to_derivatives(r, da); } }; Float TransformedDistancePairScore::evaluate(const ParticlePair &p, DerivativeAccumulator *da) const { TransformParticle tb(t_, ri_, p[1]); IMP_LOG_VERBOSE( "Transformed particle is " << tb.get_coordinate(0) << " " << tb.get_coordinate(1) << " " << tb.get_coordinate(2) << std::endl); Float ret= internal::evaluate_distance_pair_score(XYZ(p[0]), tb, da, f_.get(), boost::lambda::_1); return ret; } void TransformedDistancePairScore::set_transformation( const algebra::Transformation3D &t) { ri_= t.get_rotation().get_inverse(); t_=t; } void TransformedDistancePairScore::do_show(std::ostream &out) const { out << "function " << *f_ << std::endl; out << "transformation " << t_ <