INFO:domino_model:# Thu Apr 12 19:17:24 2012 # SVN 11973 with Boost.FileSystem # SVN 11973:12083 with OpenCV22 INFO:sampling:Creating sampling schema INFO:sampling:Fixed components: [False, False, False, False]. Anchored components [False, True, False, False] INFO:solutions_io:Getting ['reference_frames'] from solutions INFO:DominoModel:Set rigid body states for rb_3sfdA INFO:DominoModel:RigidBodyStates created 5 INFO:DominoModel:Set rigid body states for rb_3sfdB INFO:DominoModel:RigidBodyStates created 1 INFO:DominoModel:Set rigid body states for rb_3sfdC INFO:DominoModel:RigidBodyStates created 5 INFO:DominoModel:Set rigid body states for rb_3sfdD INFO:DominoModel:RigidBodyStates created 5 INFO:DominoModel:Creating simplified assembly INFO:DominoModel:Setting pair score restraint for 3sfdB 3sfdA. k = 0.147524776172, max_score = 1, stddev 2 INFO:DominoModel:Adding restraint B_A weight 1 max_score 1 INFO:DominoModel:Setting pair score restraint for 3sfdB 3sfdC. k = 0.147524776172, max_score = 1, stddev 2 INFO:DominoModel:Adding restraint B_C weight 1 max_score 1 INFO:DominoModel:Setting pair score restraint for 3sfdB 3sfdD. k = 0.147524776172, max_score = 1, stddev 2 INFO:DominoModel:Adding restraint B_D weight 1 max_score 1 INFO:DominoModel:Setting pair score restraint for 3sfdD 3sfdC. k = 0.147524776172, max_score = 1, stddev 2 INFO:DominoModel:Adding restraint D_C weight 1 max_score 1 INFO:DominoModel:Setting cross-linking restraint between 3sfdB 23 - 3sfdA 456 INFO:DominoModel:Adding restraint d_3sfdB23_3sfdA456 weight 100 max_score False INFO:DominoModel:Setting cross-linking restraint between 3sfdB 241 - 3sfdC 112 INFO:DominoModel:Adding restraint d_3sfdB241_3sfdC112 weight 100 max_score False INFO:DominoModel:Setting cross-linking restraint between 3sfdB 205 - 3sfdD 37 INFO:DominoModel:Adding restraint d_3sfdB205_3sfdD37 weight 100 max_score False INFO:DominoModel:Setting cross-linking restraint between 3sfdB 177 - 3sfdD 99 INFO:DominoModel:Adding restraint d_3sfdB177_3sfdD99 weight 100 max_score False INFO:DominoModel:Setting cross-linking restraint between 3sfdC 95 - 3sfdD 132 INFO:DominoModel:Adding restraint d_3sfdC95_3sfdD132 weight 100 max_score False INFO:DominoModel:Setting cross-linking restraint between 3sfdC 9 - 3sfdD 37 INFO:DominoModel:Adding restraint d_3sfdC9_3sfdD37 weight 100 max_score False INFO:DominoModel:Setting cross-linking restraint between 3sfdC 78 - 3sfdD 128 INFO:DominoModel:Adding restraint d_3sfdC78_3sfdD128 weight 100 max_score False INFO:DominoModel:Setting geometric complementarity restraint cB_A: 3sfdB - 3sfdA INFO:DominoModel:Adding restraint cB_A weight 0.0001 max_score 10000000000.0 INFO:DominoModel:Setting geometric complementarity restraint cB_C: 3sfdB - 3sfdC INFO:DominoModel:Adding restraint cB_C weight 0.0001 max_score 10000000000.0 INFO:DominoModel:Setting geometric complementarity restraint cB_D: 3sfdB - 3sfdD INFO:DominoModel:Adding restraint cB_D weight 0.0001 max_score 10000000000.0 INFO:DominoModel:Balanced merge tree created INFO:DominoModel:None INFO:DominoModel:Adding restraint exc_vol_3sfdA_3sfdB weight 1 max_score 0.0 INFO:DominoModel:Adding restraint exc_vol_3sfdA_3sfdC weight 1 max_score 0.0 INFO:DominoModel:Adding restraint exc_vol_3sfdA_3sfdD weight 1 max_score 0.0 INFO:DominoModel:Adding restraint exc_vol_3sfdB_3sfdC weight 1 max_score 0.0 INFO:DominoModel:Adding restraint exc_vol_3sfdB_3sfdD weight 1 max_score 0.0 INFO:DominoModel:Adding restraint exc_vol_3sfdC_3sfdD weight 1 max_score 0.0 INFO:DominoModel:Adding a em2D restraint: em_images/images.sel INFO:DominoModel:Adding restraint em2d weight 1000 max_score False INFO:DominoModel:Domino sampler INFO:DominoModel:Setting ExclusionSubsetFilterTable INFO:DominoModel:Adding RestraintScoreSubsetFilterTable DominoModel_rssf_table INFO:DominoModel:Setting BranchAndBoundAssignmentsTable INFO:DominoModel:DOMINO sampling an assignments_heap_container. Subset has 4 elements: ["rb_3sfdA" "rb_3sfdD" "rb_3sfdC" "rb_3sfdB" ] INFO:DominoModel:computing assignments for vertex ["rb_3sfdA" "rb_3sfdD" "rb_3sfdC" "rb_3sfdB" ] INFO:DominoModel:computing assignments for vertex ["rb_3sfdD" "rb_3sfdC" "rb_3sfdB" ] INFO:DominoModel:Merge tree vertex: ["rb_3sfdD" "rb_3sfdC" "rb_3sfdB" ] assignments: 9 Time 0.813585042953 sec. INFO:DominoModel:computing assignments for vertex ["rb_3sfdA" "rb_3sfdB" ] INFO:DominoModel:Merge tree vertex: ["rb_3sfdA" "rb_3sfdB" ] assignments: 5 Time 0.790365934372 sec. INFO:DominoModel:Merge tree vertex: ["rb_3sfdA" "rb_3sfdD" "rb_3sfdC" "rb_3sfdB" ] assignments: 45 Time 53.399135828 sec. INFO:DominoModel:found 45 assignments. Time 53.3999450207 INFO:domino_model:Total time for the sampling (non-parallel): 55.4285690784 INFO:DominoModel:Creating the database of solutions INFO:Database:Creating database INFO:Database:Creating table results