# Autogenerated file, run tools/build/setup_cmake.py to regenerate

include_directories(${ANN_INCLUDE_PATH}
        ${BOOST.FILESYSTEM_INCLUDE_PATH}
        ${BOOST.GRAPH_INCLUDE_PATH}
        ${BOOST.PROGRAMOPTIONS_INCLUDE_PATH}
        ${BOOST.RANDOM_INCLUDE_PATH}
        ${BOOST.REGEX_INCLUDE_PATH}
        ${BOOST.SYSTEM_INCLUDE_PATH}
        ${CGAL_INCLUDE_PATH}
        ${FFTW3_INCLUDE_PATH}
        ${GPERFTOOLS_INCLUDE_PATH}
        ${GSL_INCLUDE_PATH}
        ${HDF5_INCLUDE_PATH}
        ${LOG4CXX_INCLUDE_PATH}
        ${OPENCV21_INCLUDE_PATH}
        ${OPENCV22_INCLUDE_PATH}
        ${RMF_INCLUDE_PATH}
        ${TCMALLOC_HEAPCHECKER_INCLUDE_PATH}
        ${TCMALLOC_HEAPPROFILER_INCLUDE_PATH})
link_directories(${ANN_LINK_PATH}
        ${BOOST.FILESYSTEM_LINK_PATH}
        ${BOOST.GRAPH_LINK_PATH}
        ${BOOST.PROGRAMOPTIONS_LINK_PATH}
        ${BOOST.RANDOM_LINK_PATH}
        ${BOOST.REGEX_LINK_PATH}
        ${BOOST.SYSTEM_LINK_PATH}
        ${CGAL_LINK_PATH}
        ${FFTW3_LINK_PATH}
        ${GPERFTOOLS_LINK_PATH}
        ${GSL_LINK_PATH}
        ${HDF5_LINK_PATH}
        ${LOG4CXX_LINK_PATH}
        ${OPENCV21_LINK_PATH}
        ${OPENCV22_LINK_PATH}
        ${RMF_LINK_PATH}
        ${TCMALLOC_HEAPCHECKER_LINK_PATH}
        ${TCMALLOC_HEAPPROFILER_LINK_PATH})

set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${EM2D_CXX_FLAGS}")


File(GLOB runtimepytests "${PROJECT_BINARY_DIR}/test/em2d/test_*.py")

math(EXPR short_timeout "${IMP_TIMEOUT_FACTOR} * 5")
math(EXPR medium_timeout "${IMP_TIMEOUT_FACTOR} * 15")
math(EXPR expensive_timeout "${IMP_TIMEOUT_FACTOR} * 120")

# should make into function
foreach (test ${runtimepytests} ${PROJECT_SOURCE_DIR}/modules/em2d/test/test_align2d.py
${PROJECT_SOURCE_DIR}/modules/em2d/test/test_argminmax.py
${PROJECT_SOURCE_DIR}/modules/em2d/test/test_clustering_of_models.py
${PROJECT_SOURCE_DIR}/modules/em2d/test/test_collision_cross_section.py
${PROJECT_SOURCE_DIR}/modules/em2d/test/test_csv_related.py
${PROJECT_SOURCE_DIR}/modules/em2d/test/test_database.py
${PROJECT_SOURCE_DIR}/modules/em2d/test/test_domino_filters.py
${PROJECT_SOURCE_DIR}/modules/em2d/test/test_em2d_restraint.py
${PROJECT_SOURCE_DIR}/modules/em2d/test/test_fft_operations.py
${PROJECT_SOURCE_DIR}/modules/em2d/test/test_images_opencv.py
${PROJECT_SOURCE_DIR}/modules/em2d/test/test_registration_results.py
${PROJECT_SOURCE_DIR}/modules/em2d/test/test_sampling.py
${PROJECT_SOURCE_DIR}/modules/em2d/test/test_selection_files.py
${PROJECT_SOURCE_DIR}/modules/em2d/test/test_solutions_io.py)
  GET_FILENAME_COMPONENT(name ${test} NAME)
  if(EXISTS "${PROJECT_BINARY_DIR}/test/em2d/${name}tests")
    FILE(READ "${PROJECT_BINARY_DIR}/test/em2d/${name}tests" contents)
    STRING(REGEX REPLACE ";" "\\\\;" contents "${contents}")
    STRING(REGEX REPLACE "\n" ";" contents "${contents}")
    foreach(testline ${contents})
      string(REGEX REPLACE "([A-Za-z0-9_]+\\.[A-Za-z0-9_]+) (.*)"
                           "\\1;\\2" split "${testline}")
      list(GET split 0 methname)
      list(GET split 1 docstring)
      add_test("em2d.${name}.${methname}" ${IMP_TEST_SETUP} python ${test} "${methname}")
      set_tests_properties("em2d.${name}.${methname}" PROPERTIES LABELS "IMP.em2d;test;length_short")
      set_tests_properties("em2d.${name}.${methname}" PROPERTIES MEASUREMENT "docstring=${docstring}")
      set_tests_properties("em2d.${name}.${methname}" PROPERTIES TIMEOUT ${short_timeout})
    endforeach()
  else()
    add_test("em2d.${name}" ${IMP_TEST_SETUP} python ${test})
    set_tests_properties("em2d.${name}" PROPERTIES LABELS "IMP.em2d;test;length_short")
    set_tests_properties("em2d.${name}" PROPERTIES TIMEOUT ${short_timeout})
    set_tests_properties("em2d.${name}" PROPERTIES COST 1)
  endif()
endforeach(test)

foreach (test ${PROJECT_SOURCE_DIR}/modules/em2d/test/medium_test_buildxlinks.py
${PROJECT_SOURCE_DIR}/modules/em2d/test/medium_test_project.py
${PROJECT_SOURCE_DIR}/modules/em2d/test/medium_test_projection_registration.py
${PROJECT_SOURCE_DIR}/modules/em2d/test/medium_test_relative_mover.py
${PROJECT_SOURCE_DIR}/modules/em2d/test/medium_test_rigid_bodies_image_fit.py
${PROJECT_SOURCE_DIR}/modules/em2d/test/medium_test_segmentation_routines.py)
  GET_FILENAME_COMPONENT(name ${test} NAME)
  if(EXISTS "${PROJECT_BINARY_DIR}/test/em2d/${name}tests")
    FILE(READ "${PROJECT_BINARY_DIR}/test/em2d/${name}tests" contents)
    STRING(REGEX REPLACE ";" "\\\\;" contents "${contents}")
    STRING(REGEX REPLACE "\n" ";" contents "${contents}")
    foreach(testline ${contents})
      string(REGEX REPLACE "([A-Za-z0-9_]+\\.[A-Za-z0-9_]+) (.*)"
                           "\\1;\\2" split "${testline}")
      list(GET split 0 methname)
      list(GET split 1 docstring)
      add_test("em2d.${name}.${methname}" ${IMP_TEST_SETUP} python ${test} "${methname}")
      set_tests_properties("em2d.${name}.${methname}" PROPERTIES LABELS "IMP.em2d;test;length_medium")
      set_tests_properties("em2d.${name}.${methname}" PROPERTIES MEASUREMENT "docstring=${docstring}")
      set_tests_properties("em2d.${name}.${methname}" PROPERTIES TIMEOUT ${medium_timeout})
    endforeach()
  else()
    add_test("em2d.${name}" ${IMP_TEST_SETUP} python ${test})
    set_tests_properties("em2d.${name}" PROPERTIES LABELS "IMP.em2d;test;length_medium")
    set_tests_properties("em2d.${name}" PROPERTIES TIMEOUT ${medium_timeout})
    set_tests_properties("em2d.${name}" PROPERTIES COST 2)
  endif()
endforeach(test)

foreach (test )
  GET_FILENAME_COMPONENT(name ${test} NAME)
  if(EXISTS "${PROJECT_BINARY_DIR}/test/em2d/${name}tests")
    FILE(READ "${PROJECT_BINARY_DIR}/test/em2d/${name}tests" contents)
    STRING(REGEX REPLACE ";" "\\\\;" contents "${contents}")
    STRING(REGEX REPLACE "\n" ";" contents "${contents}")
    foreach(testline ${contents})
      string(REGEX REPLACE "([A-Za-z0-9_]+\\.[A-Za-z0-9_]+) (.*)"
                           "\\1;\\2" split "${testline}")
      list(GET split 0 methname)
      list(GET split 1 docstring)
      add_test("em2d.${name}.${methname}" ${IMP_TEST_SETUP} python ${test} "${methname}")
      set_tests_properties("em2d.${name}.${methname}" PROPERTIES LABELS "IMP.em2d;test;length_expensive")
      set_tests_properties("em2d.${name}.${methname}" PROPERTIES MEASUREMENT "docstring=${docstring}")
      set_tests_properties("em2d.${name}.${methname}" PROPERTIES TIMEOUT ${expensive_timeout})
    endforeach()
  else()
    add_test("em2d.${name}" ${IMP_TEST_SETUP} python ${test})
    set_tests_properties("em2d.${name}" PROPERTIES LABELS "IMP.em2d;test;length_expensive")
    set_tests_properties("em2d.${name}" PROPERTIES TIMEOUT ${expensive_timeout})
    set_tests_properties("em2d.${name}" PROPERTIES COST 3)
  endif()
endforeach(test)

set(cpp_tests )

foreach (test ${cpp_tests})
   GET_FILENAME_COMPONENT(name ${test} NAME)
   GET_FILENAME_COMPONENT(name_we ${test} NAME_WE)
   add_executable("em2d.${name}" ${test})
   target_link_libraries("em2d.${name}"     imp_em2d
    ${IMP_BASE_LIBRARY}
${IMP_CGAL_LIBRARY}
${IMP_ALGEBRA_LIBRARY}
${IMP_KERNEL_LIBRARY}
${IMP_DISPLAY_LIBRARY}
${IMP_GSL_LIBRARY}
${IMP_SCORE_FUNCTOR_LIBRARY}
${IMP_STATISTICS_LIBRARY}
${IMP_CORE_LIBRARY}
${IMP_CONTAINER_LIBRARY}
${IMP_ATOM_LIBRARY}
${IMP_EM_LIBRARY}
${IMP_RMF_LIBRARY}
${IMP_DOMINO_LIBRARY}
    ${FFTW3_LIBRARIES}
${BOOST.PROGRAMOPTIONS_LIBRARIES}
${BOOST.FILESYSTEM_LIBRARIES}
${OPENCV21_LIBRARIES}
${OPENCV22_LIBRARIES}
${BOOST.SYSTEM_LIBRARIES}
${GPERFTOOLS_LIBRARIES}
${TCMALLOC_HEAPPROFILER_LIBRARIES}
${TCMALLOC_HEAPCHECKER_LIBRARIES}
${LOG4CXX_LIBRARIES}
${BOOST.RANDOM_LIBRARIES}
${CGAL_LIBRARIES}
${ANN_LIBRARIES}
${GSL_LIBRARIES}
${BOOST.REGEX_LIBRARIES}
${RMF_LIBRARIES}
${BOOST.GRAPH_LIBRARIES}
${HDF5_LIBRARIES})
   set_target_properties("em2d.${name}" PROPERTIES
                         RUNTIME_OUTPUT_DIRECTORY "${PROJECT_BINARY_DIR}/test/em2d/"
                         OUTPUT_NAME ${name_we})
   add_test("em2d.${name}" ${IMP_TEST_SETUP}
            "${PROJECT_BINARY_DIR}/test/em2d/${name_we}${CMAKE_EXECUTABLE_SUFFIX}")
   set_tests_properties("em2d.${name}" PROPERTIES LABELS "IMP.em2d;test;length_short")
   set_tests_properties("em2d.${name}" PROPERTIES TIMEOUT ${short_timeout})
   set_tests_properties("em2d.${name}" PROPERTIES COST 1)
   set(executables ${executables} "em2d.${name}")
endforeach(test)


set(mdcpp_tests )

foreach (test ${mdcpp_tests})
   GET_FILENAME_COMPONENT(name ${test} NAME)
   GET_FILENAME_COMPONENT(name_we ${test} NAME_WE)
   add_executable("em2d.${name}" ${test})
   target_link_libraries("em2d.${name}"     imp_em2d
    ${IMP_BASE_LIBRARY}
${IMP_CGAL_LIBRARY}
${IMP_ALGEBRA_LIBRARY}
${IMP_KERNEL_LIBRARY}
${IMP_DISPLAY_LIBRARY}
${IMP_GSL_LIBRARY}
${IMP_SCORE_FUNCTOR_LIBRARY}
${IMP_STATISTICS_LIBRARY}
${IMP_CORE_LIBRARY}
${IMP_CONTAINER_LIBRARY}
${IMP_ATOM_LIBRARY}
${IMP_EM_LIBRARY}
${IMP_RMF_LIBRARY}
${IMP_DOMINO_LIBRARY}
    ${FFTW3_LIBRARIES}
${BOOST.PROGRAMOPTIONS_LIBRARIES}
${BOOST.FILESYSTEM_LIBRARIES}
${OPENCV21_LIBRARIES}
${OPENCV22_LIBRARIES}
${BOOST.SYSTEM_LIBRARIES}
${GPERFTOOLS_LIBRARIES}
${TCMALLOC_HEAPPROFILER_LIBRARIES}
${TCMALLOC_HEAPCHECKER_LIBRARIES}
${LOG4CXX_LIBRARIES}
${BOOST.RANDOM_LIBRARIES}
${CGAL_LIBRARIES}
${ANN_LIBRARIES}
${GSL_LIBRARIES}
${BOOST.REGEX_LIBRARIES}
${RMF_LIBRARIES}
${BOOST.GRAPH_LIBRARIES}
${HDF5_LIBRARIES})
   set_target_properties("em2d.${name}" PROPERTIES
                         RUNTIME_OUTPUT_DIRECTORY "${PROJECT_BINARY_DIR}/test/em2d/"
                         OUTPUT_NAME ${name_we})
   add_test("em2d.${name}" ${IMP_TEST_SETUP}
            "${PROJECT_BINARY_DIR}/test/em2d/${name_we}${CMAKE_EXECUTABLE_SUFFIX}")
   set_tests_properties("em2d.${name}" PROPERTIES LABELS "IMP.em2d;test;length_medium")
   set_tests_properties("em2d.${name}" PROPERTIES TIMEOUT ${medium_timeout})
   set_tests_properties("em2d.${name}" PROPERTIES COST 1)
   set(executables ${executables} "em2d.${name}")
endforeach(test)

set(excpp_tests )

foreach (test ${excpp_tests})
   GET_FILENAME_COMPONENT(name ${test} NAME)
   GET_FILENAME_COMPONENT(name_we ${test} NAME_WE)
   add_executable("em2d.${name}" ${test})
   target_link_libraries("em2d.${name}"     imp_em2d
    ${IMP_BASE_LIBRARY}
${IMP_CGAL_LIBRARY}
${IMP_ALGEBRA_LIBRARY}
${IMP_KERNEL_LIBRARY}
${IMP_DISPLAY_LIBRARY}
${IMP_GSL_LIBRARY}
${IMP_SCORE_FUNCTOR_LIBRARY}
${IMP_STATISTICS_LIBRARY}
${IMP_CORE_LIBRARY}
${IMP_CONTAINER_LIBRARY}
${IMP_ATOM_LIBRARY}
${IMP_EM_LIBRARY}
${IMP_RMF_LIBRARY}
${IMP_DOMINO_LIBRARY}
    ${FFTW3_LIBRARIES}
${BOOST.PROGRAMOPTIONS_LIBRARIES}
${BOOST.FILESYSTEM_LIBRARIES}
${OPENCV21_LIBRARIES}
${OPENCV22_LIBRARIES}
${BOOST.SYSTEM_LIBRARIES}
${GPERFTOOLS_LIBRARIES}
${TCMALLOC_HEAPPROFILER_LIBRARIES}
${TCMALLOC_HEAPCHECKER_LIBRARIES}
${LOG4CXX_LIBRARIES}
${BOOST.RANDOM_LIBRARIES}
${CGAL_LIBRARIES}
${ANN_LIBRARIES}
${GSL_LIBRARIES}
${BOOST.REGEX_LIBRARIES}
${RMF_LIBRARIES}
${BOOST.GRAPH_LIBRARIES}
${HDF5_LIBRARIES})
   set_target_properties("em2d.${name}" PROPERTIES
                         RUNTIME_OUTPUT_DIRECTORY "${PROJECT_BINARY_DIR}/test/em2d/"
                         OUTPUT_NAME ${name_we})
   add_test("em2d.${name}" ${IMP_TEST_SETUP}
            "${PROJECT_BINARY_DIR}/test/em2d/${name_we}${CMAKE_EXECUTABLE_SUFFIX}")
   set_tests_properties("em2d.${name}" PROPERTIES LABELS "IMP.em2d;test;length_expensive")
   set_tests_properties("em2d.${name}" PROPERTIES TIMEOUT ${expensive_timeout})
   set_tests_properties("em2d.${name}" PROPERTIES COST 1)
   set(executables ${executables} "em2d.${name}")
endforeach(test)

add_custom_target("imp_em2d_tests" ALL DEPENDS ${executables})