[domino]
max_value_threshold = 10000.
max_num_states_for_subset = 1000
max_anchor_penetration = 0.
heap_size = 500000
cache_size = 50000
 
[fragments]
length = 1
radius_scale = 1.
atomic = 1
rigid = 1

[fitting]
pca_max_angle_diff = 15.
pca_max_size_diff = 10.
pca_max_cent_dist_diff = 10.
max_asmb_fit_score = 0.5

[connectivity]
upper_bound = 10
k = 0.0236
max_value = 0.3

[xlink]
upper_bound = 20
k = 0.0236
max_value = 0.3
between_residues = 0

[radius_of_gyration]
scale = 1.5
max_score = 10

[filters]
conn_max_violations = 4
xlink_max_violations = 4
ev_max_violations = 3 

[excluded_volume]
distance = 3
slack = 1
lower_bound = 2
k = 0.59
max_score_for_pair = 0.295
allowed_percentage_of_bad_pairs = 0.01
scoring_mode = 2

[complementarity]
max_score = 100000
max_penetration = 200
interior_layer_thickness = 2
boundary_coef = -3
comp_coef = 1
penetration_coef = 2