import IMP import IMP.test import IMP.restrainer class Tests(IMP.test.TestCase): def setUp(self): IMP.test.TestCase.setUp(self) RepParser = IMP.restrainer.XMLRepresentation(self.get_input_file_name('pdb_representation.xml')) RestraintParser = IMP.restrainer.XMLRestraint(self.get_input_file_name('pdb_connectivity_restraint.xml')) self.representation = RepParser.run() self.restraint = RestraintParser.run() self.Model = self.representation.get_model() self.restraint.add_to_representation(self.representation) def test_show(self): """Check get_restraint_by_name, get_weight, and set_weight for connectivity restraint for pdb""" restraint_name = 'connectivity_restraint_1' connectivity_restraint = self.restraint.get_restraint_by_name(restraint_name).imp_restraint connectivity_restraint.show() protein1_hierarchy = self.representation.find_by_id('Protein1').model_decorator root_hierarchy = self.representation.model_decorator ub = IMP.algebra.Vector3D(-50.0,-50.0,-50.0) lb = IMP.algebra.Vector3D( 50.0, 50.0, 50.0) bb = IMP.algebra.BoundingBox3D(ub, lb) for i in xrange (1, 4): name = "Protein" + str(i) + "_rigid" rbs = self.restraint.get_restraint_by_name (name) translation = IMP.algebra.get_random_vector_in(bb) rotation = IMP.algebra.get_random_rotation_3d() transformation = IMP.algebra.Transformation3D(rotation, translation) for rbd in rbs.rigid_bodies: rbd.set_reference_frame(IMP.algebra.ReferenceFrame3D(transformation)) root_hierarchy = self.representation.model_decorator evr = self.restraint.get_restraint_by_name('excluded_volume_restraint') self.assertAlmostEqual(evr.get_weight(), 1.0, delta=1e-4) evr = self.restraint.get_restraint_by_name('connectivity_restraint_1') self.assertAlmostEqual(evr.get_weight(), 100.0, delta=1e-4) evr = self.restraint.get_restraint_by_name('connectivity_restraint_2') self.assertAlmostEqual(evr.get_weight(), 1.5, delta=1e-4) #evr.set_weight(0.8) #self.assertInTolerance (evr.get_weight(), 0.8, 1e-4) restraint_set = self.restraint.get_restraint_set_by_name("pulldown_restraint_set") self.assertAlmostEqual(restraint_set.get_weight(), 100.0, delta=1e-4) self.restraint.show_all_restraints() self.Model.show() self.Model.evaluate(False) if __name__ == '__main__': IMP.test.main()