/** * \file KMCentersNode.h \brief generic node of the kc-tree * * Copyright 2007-2013 IMP Inventors. All rights reserved. * */ #ifndef IMPSTATISTICS_INTERNAL_KM_CENTERS_NODE_H #define IMPSTATISTICS_INTERNAL_KM_CENTERS_NODE_H #include "KMData.h" #include "KMRectangle.h" #include "KMCenters.h" IMPSTATISTICS_BEGIN_INTERNAL_NAMESPACE #ifndef IMP_DOXYGEN //! Generic KMCentersTree node /** Nodes in kc-trees are of two types, splitting nodes which contain splitting information (a splitting hyperplane orthogonal to one of the coordinate axes) and leaf nodes which contain point information (an array of points stored in a bucket). \unstable{KMCentersNode} */ class IMPSTATISTICSEXPORT KMCentersNode { public: KMCentersNode(){} //!Constructor /** \param[in] the bounding box of the points */ KMCentersNode(const KMRectangle &bb, KMCenters *centers,int level); virtual ~KMCentersNode(); //! Get the number of nodes in this subtree /** /note we assume that the number of data points in the leafs is 1 */ int get_subtree_size() { return 2*n_data_ - 1; } int get_number_of_data_points() { return n_data_; } KMPoint get_mid_point() const; KMRectangle &get_bounding_box() //TODO - should be const ? { return bnd_box_; } //! Compute sums of points virtual void compute_sums()=0; const KMPoint * get_sums() const {return &sum_;} double get_sum_sq() const {return sum_sq_;} //! Compute neighbors for centers - TODO should cands be const & ? virtual void get_neighbors(const Ints &cands, KMPointArray *sums, KMPoint *sum_sqs,Ints *weights)=0; //! get assignments for leaf node virtual void get_assignments(const Ints &cands, Ints &close_center)=0; // sample a center point c virtual KMPoint sample_center()=0; //Print node virtual void show(std::ostream&out=std::cout) const =0; protected: //! Find the center closest to the middle of the bounding box of the node /** \param[in] cands a set of center indexes, one of which should be the closest */ int mid_center(const Ints &cands); //! Determine if a candidate center is close enough /** \param[in] candidate_centers_inds the indexes of the candidate centers \param[in] close_centers_inds returned subset of candidate_centers_inds that are close enough to the bounding box of the node according to the following cretiria. A candidate center is close enough to the bounding box if b is closer to the candidate center to the middle center. b is the vertex of the bounding box that it closest of the candidate center. To excelerate the calculate we make use of the following observation: A point p is closer c than to c' if and only if (p-c).(p-c) < (p-c').(p-c') -> (c-c').(c-c') < 2(p-c').(c-c'). */ void compute_close_centers( const Ints &candidate_centers_inds, Ints *close_centers_inds); void post_neighbor(KMPointArray *sums, KMPoint *sum_sqs, Ints *weights,int center_ind); void post_one_neighbor(KMPointArray *sums, KMPoint *sum_sqs, Ints *weights,int center_ind, const KMPoint &p); int n_data_; // number of data points associated with the node KMPoint sum_; //sum of points for each dimension double sum_sq_; // sum of squares KMRectangle bnd_box_; // bounding box for cell KMCenters *centers_; //all of the centers int level_; }; #endif IMPSTATISTICS_END_INTERNAL_NAMESPACE #endif /* IMPSTATISTICS_INTERNAL_KM_CENTERS_NODE_H */